Serialized Form

Package org.biojava.nbio.ontology

Exception org.biojava.nbio.ontology.AlreadyExistsException

class AlreadyExistsException extends OntologyException implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.DefaultOps

class DefaultOps extends Object implements Serializable

serialVersionUID:

1L

Exception org.biojava.nbio.ontology.InvalidTermException

class InvalidTermException extends OntologyException implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.Ontology.Impl

class Impl extends Object implements Serializable

serialVersionUID:

-8064461497813727957L

Serialized Fields

description

String description

localRemoteTerms

Set<Term> localRemoteTerms

name

String name

objectTriples

Map<Term,Set<Triple>> objectTriples

ops

OntologyOps ops

relationTriples

Map<Term,Set<Triple>> relationTriples

remoteTerms

Map<Term,RemoteTerm> remoteTerms

subjectTriples

Map<Term,Set<Triple>> subjectTriples

terms

Map<String,Term> terms

triples

Set<Triple> triples

Exception org.biojava.nbio.ontology.OntologyException

class OntologyException extends Exception implements Serializable

serialVersionUID:

1L

Class org.biojava.nbio.ontology.OntologyTerm.Impl

class Impl extends Object implements Serializable

serialVersionUID:

1L

Serialized Fields

ontology

Ontology ontology

synonyms

Set synonyms

target

Ontology target

Class org.biojava.nbio.ontology.RemoteTerm.Impl

class Impl extends AbstractTerm implements Serializable

serialVersionUID:

922700041939183676L

Serialized Fields

name

String name

ontology

Ontology ontology

remoteTerm

Term remoteTerm

synonyms

Set synonyms

Class org.biojava.nbio.ontology.Term.Impl

class Impl extends AbstractTerm implements Serializable

serialVersionUID:

6561668917514377417L

Serialized Fields

annotation

Annotation annotation

name

String name

ontology

Ontology ontology

synonyms

Set<Object> synonyms

Class org.biojava.nbio.ontology.Triple.Impl

class Impl extends Object implements Serializable

serialVersionUID:

3807331980372839221L

Serialized Fields

description

String description

name

String name

object

Term object

predicate

Term predicate

subject

Term subject

synonyms

Set<Object> synonyms

Class org.biojava.nbio.ontology.Variable.Impl

class Impl extends Term.Impl implements Serializable

serialVersionUID:

1L

Package org.biojava.nbio.ontology.utils

Class org.biojava.nbio.ontology.utils.AbstractAnnotation

class AbstractAnnotation extends Object implements Serializable

serialVersionUID:

2753449055959952873L

Error org.biojava.nbio.ontology.utils.AssertionFailure

class AssertionFailure extends AssertionError implements Serializable

Class org.biojava.nbio.ontology.utils.SmallAnnotation

class SmallAnnotation extends AbstractAnnotation implements Serializable

Serialized Fields

properties

Map properties

Class org.biojava.nbio.ontology.utils.SmallMap

class SmallMap extends AbstractMap implements Serializable

Serialized Fields

mappings

Object[] mappings

numMappings

int numMappings

Class org.biojava.nbio.ontology.utils.StaticMemberPlaceHolder

class StaticMemberPlaceHolder extends Object implements Serializable

Serialization Methods

readResolve

public Object readResolve()
                   throws ObjectStreamException

Throws:

ObjectStreamException

Serialized Fields

className

String className

fieldName

String fieldName