fr.ifremer.isisfish.entities

Class PopulationSeasonInfoImpl

java.lang.Object

org.nuiton.topia.persistence.TopiaEntityAbstract

fr.ifremer.isisfish.entities.SeasonAbstract

fr.ifremer.isisfish.entities.SeasonImpl

fr.ifremer.isisfish.entities.PopulationSeasonInfoAbstract

fr.ifremer.isisfish.entities.PopulationSeasonInfoImpl

All Implemented Interfaces:

PopulationSeasonInfo, Season, Serializable, org.nuiton.topia.persistence.TopiaEntity, org.nuiton.topia.persistence.TopiaEntityContextable

public class PopulationSeasonInfoImpl
extends PopulationSeasonInfoAbstract

PopulationSeasonInfoImpl.java Created: 18 mars 2006 15:24:56

Version:

$Revision: 3969 $ Last update: $Date: 2014-04-17 18:48:13 +0200 (Thu, 17 Apr 2014) $ by : $Author: echatellier $

Author:

poussin

See Also:

Serialized Form

Field Summary

Fields inherited from class fr.ifremer.isisfish.entities.PopulationSeasonInfoAbstract

emigrationEquation, emigrationMatrix, groupChange, immigrationEquation, immigrationMatrix, lengthChangeMatrix, migrationEquation, migrationMatrix, population, reproduction, reproductionDistribution, simpleLengthChangeMatrix, useEquationMigration

Fields inherited from class fr.ifremer.isisfish.entities.SeasonAbstract

firstMonth, lastMonth

Fields inherited from class org.nuiton.topia.persistence.TopiaEntityAbstract

readListeners, readVetoables, topiaContext, topiaCreateDate, topiaId, topiaVersion, writeListeners, writeVetoables

Fields inherited from interface fr.ifremer.isisfish.entities.PopulationSeasonInfo

PROPERTY_EMIGRATION_EQUATION, PROPERTY_EMIGRATION_MATRIX, PROPERTY_GROUP_CHANGE, PROPERTY_IMMIGRATION_EQUATION, PROPERTY_IMMIGRATION_MATRIX, PROPERTY_LENGTH_CHANGE_MATRIX, PROPERTY_MIGRATION_EQUATION, PROPERTY_MIGRATION_MATRIX, PROPERTY_POPULATION, PROPERTY_REPRODUCTION, PROPERTY_REPRODUCTION_DISTRIBUTION, PROPERTY_SIMPLE_LENGTH_CHANGE_MATRIX, PROPERTY_USE_EQUATION_MIGRATION

Fields inherited from interface fr.ifremer.isisfish.entities.Season

PROPERTY_FIRST_MONTH, PROPERTY_LAST_MONTH

Fields inherited from interface org.nuiton.topia.persistence.TopiaEntityContextable

TOPIA_CONTEXT

Fields inherited from interface org.nuiton.topia.persistence.TopiaEntity

AGGREGATE, COMPOSITE, TOPIA_CREATE_DATE, TOPIA_ID, TOPIA_VERSION

Constructor Summary

Constructors

Constructor and Description
PopulationSeasonInfoImpl()

Method Summary

Methods

Modifier and Type	Method and Description
org.nuiton.math.matrix.MatrixND	computeLengthChangeMatrix() Create default non spacialized matrix group changement.
org.nuiton.math.matrix.MatrixND	createNoSpacializedChangeGroupMatrix() Create not initialized no spacialized change group matrix.
protected org.nuiton.math.matrix.MatrixND	createSpacializedChangeGroupMatrix() Create not initialized spacialized change group matrix.
double	getCapturability(PopulationGroup group)
org.nuiton.math.matrix.MatrixND	getEmigrationMatrix()
protected org.nuiton.math.matrix.MatrixND	getEmigrationMatrix(org.nuiton.math.matrix.MatrixND aN)
org.nuiton.math.matrix.MatrixND	getEmigrationMatrix(Month month, org.nuiton.math.matrix.MatrixND N) Matrix [(group, zone(left)) x (group, zone(left))]
org.nuiton.math.matrix.MatrixND	getGroupChangeMatrix(Month month) Return change group matrix for the given month.
org.nuiton.math.matrix.MatrixND	getImmigrationMatrix()
protected org.nuiton.math.matrix.MatrixND	getImmigrationMatrix(org.nuiton.math.matrix.MatrixND aN)
org.nuiton.math.matrix.MatrixND	getImmigrationMatrix(Month month, org.nuiton.math.matrix.MatrixND N) Matrix [(group, zone(reached)) x (group, zone(reached))]
org.nuiton.math.matrix.MatrixND	getLengthChangeMatrix()
org.nuiton.math.matrix.MatrixND	getMigrationMatrix() overload to return matrix if no matrix available.
protected org.nuiton.math.matrix.MatrixND	getMigrationMatrix(org.nuiton.math.matrix.MatrixND aN)
org.nuiton.math.matrix.MatrixND	getMigrationMatrix(Month month, org.nuiton.math.matrix.MatrixND N) Matrix [(group, zone(left)) x (group, zone(reached))]
org.nuiton.math.matrix.MatrixND	getReproductionDistribution()
org.nuiton.math.matrix.MatrixND	getReproductionMatrix(Month month, org.nuiton.math.matrix.MatrixND aN) Construit la matrice de reproduction.
void	setEmigrationEquationContent(String content)
void	setImmigrationEquationContent(String content)
void	setMigrationEquationContent(String content)
org.nuiton.math.matrix.MatrixND	spacializeLengthChangeMatrix(org.nuiton.math.matrix.MatrixND mat) Convert no spacialized matrix to spacialized matrix.
String	toString()
org.nuiton.math.matrix.MatrixND	unspacializeLengthChangeMatrix(org.nuiton.math.matrix.MatrixND mat) Convert spacialized matrix to non spacialized matrix.

Methods inherited from class fr.ifremer.isisfish.entities.PopulationSeasonInfoAbstract

accept, accept0, delete, getAggregate, getComposite, getEmigrationEquation, getGroupChange, getImmigrationEquation, getMigrationEquation, getPopulation, getReproduction, getSimpleLengthChangeMatrix, getUseEquationMigration, isGroupChange, isReproduction, isSimpleLengthChangeMatrix, isUseEquationMigration, setEmigrationEquation, setEmigrationMatrix, setGroupChange, setImmigrationEquation, setImmigrationMatrix, setLengthChangeMatrix, setMigrationEquation, setMigrationMatrix, setPopulation, setReproduction, setReproductionDistribution, setSimpleLengthChangeMatrix, setUseEquationMigration, update

Methods inherited from class fr.ifremer.isisfish.entities.SeasonImpl

containsMonth, getMonths, setMonths

Methods inherited from class fr.ifremer.isisfish.entities.SeasonAbstract

getFirstMonth, getLastMonth, setFirstMonth, setLastMonth

Methods inherited from class org.nuiton.topia.persistence.TopiaEntityAbstract

addPropertyChangeListener, addPropertyChangeListener, addPropertyListener, addPropertyListener, addVetoableChangeListener, addVetoableChangeListener, addVetoableListener, addVetoableListener, equals, fireOnPostRead, fireOnPostRead, fireOnPostWrite, fireOnPostWrite, fireOnPreRead, fireOnPreWrite, getReadPropertyChangeSupport, getReadVetoableChangeSupport, getTopiaContext, getTopiaCreateDate, getTopiaId, getTopiaVersion, getWritePropertyChangeSupport, getWriteVetoableChangeSupport, hashCode, removePropertyChangeListener, removePropertyChangeListener, removePropertyListener, removePropertyListener, removeVetoableChangeListener, removeVetoableChangeListener, removeVetoableListener, removeVetoableListener, setTopiaContext, setTopiaCreateDate, setTopiaId, setTopiaVersion

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface fr.ifremer.isisfish.entities.Season

containsMonth, getFirstMonth, getLastMonth, getMonths, setFirstMonth, setLastMonth, setMonths

Methods inherited from interface org.nuiton.topia.persistence.TopiaEntityContextable

getTopiaContext, setTopiaContext

Methods inherited from interface org.nuiton.topia.persistence.TopiaEntity

addPropertyChangeListener, addPropertyChangeListener, addPropertyListener, addPropertyListener, addVetoableChangeListener, addVetoableChangeListener, addVetoableListener, addVetoableListener, getTopiaCreateDate, getTopiaId, getTopiaVersion, removePropertyChangeListener, removePropertyChangeListener, removePropertyListener, removePropertyListener, removeVetoableChangeListener, removeVetoableChangeListener, removeVetoableListener, removeVetoableListener, setTopiaCreateDate, setTopiaId, setTopiaVersion

Constructor Detail

PopulationSeasonInfoImpl

public PopulationSeasonInfoImpl()

Method Detail

getReproductionDistribution

public org.nuiton.math.matrix.MatrixND getReproductionDistribution()

Specified by:

getReproductionDistribution in interface PopulationSeasonInfo

Overrides:

getReproductionDistribution in class PopulationSeasonInfoAbstract

getMigrationMatrix

public org.nuiton.math.matrix.MatrixND getMigrationMatrix()

overload to return matrix if no matrix available. The matrix returned by this method can't be used directly because it contains only the migration (departure != arrival) and not the coefficient that stay on the same zone. This coefficient is calculated with over coefficient to have 1 as sum of all coefficient.

Specified by:

getMigrationMatrix in interface PopulationSeasonInfo

Overrides:

getMigrationMatrix in class PopulationSeasonInfoAbstract

See Also:

PopulationSeasonInfoAbstract.getMigrationMatrix()

getEmigrationMatrix

public org.nuiton.math.matrix.MatrixND getEmigrationMatrix()

Specified by:

getEmigrationMatrix in interface PopulationSeasonInfo

Overrides:

getEmigrationMatrix in class PopulationSeasonInfoAbstract

getImmigrationMatrix

public org.nuiton.math.matrix.MatrixND getImmigrationMatrix()

Specified by:

getImmigrationMatrix in interface PopulationSeasonInfo

Overrides:

getImmigrationMatrix in class PopulationSeasonInfoAbstract

getCapturability

public double getCapturability(PopulationGroup group)

createNoSpacializedChangeGroupMatrix

public org.nuiton.math.matrix.MatrixND createNoSpacializedChangeGroupMatrix()

Create not initialized no spacialized change group matrix.

Returns:

not initialized no spacialized change group matrix

getLengthChangeMatrix

public org.nuiton.math.matrix.MatrixND getLengthChangeMatrix()

Specified by:

getLengthChangeMatrix in interface PopulationSeasonInfo

Overrides:

getLengthChangeMatrix in class PopulationSeasonInfoAbstract

unspacializeLengthChangeMatrix

public org.nuiton.math.matrix.MatrixND unspacializeLengthChangeMatrix(org.nuiton.math.matrix.MatrixND mat)

Convert spacialized matrix to non spacialized matrix.

Parameters:

mat - spacialized matrix

Returns:

non spacialized matrix

createSpacializedChangeGroupMatrix

protected org.nuiton.math.matrix.MatrixND createSpacializedChangeGroupMatrix()

Create not initialized spacialized change group matrix.

Returns:

not initialized spacialized change group matrix

spacializeLengthChangeMatrix

public org.nuiton.math.matrix.MatrixND spacializeLengthChangeMatrix(org.nuiton.math.matrix.MatrixND mat)

Convert no spacialized matrix to spacialized matrix.

Parameters:

mat - no spacialized matrix

Returns:

spacialized matrix

computeLengthChangeMatrix

public org.nuiton.math.matrix.MatrixND computeLengthChangeMatrix()

Create default non spacialized matrix group changement.

getGroupChangeMatrix

public org.nuiton.math.matrix.MatrixND getGroupChangeMatrix(Month month)

Return change group matrix for the given month. for species in Length, matrix returned is all time spacialized (needed for simulation)

getMigrationMatrix

public org.nuiton.math.matrix.MatrixND getMigrationMatrix(Month month,
                                                 org.nuiton.math.matrix.MatrixND N)

Description copied from interface: PopulationSeasonInfo

Matrix [(group, zone(left)) x (group, zone(reached))]

Parameters:

month -

Matrix [(group, zone(left)) x (group, zone(reached))]

N -

Matrix [(group, zone(left)) x (group, zone(reached))]

Returns:

Matrix [(group, zone(left)) x (group, zone(reached))]

getMigrationMatrix

protected org.nuiton.math.matrix.MatrixND getMigrationMatrix(org.nuiton.math.matrix.MatrixND aN)

getEmigrationMatrix

public org.nuiton.math.matrix.MatrixND getEmigrationMatrix(Month month,
                                                  org.nuiton.math.matrix.MatrixND N)

Description copied from interface: PopulationSeasonInfo

Matrix [(group, zone(left)) x (group, zone(left))]

Parameters:

month -

Matrix [(group, zone(left)) x (group, zone(left))]

N -

Matrix [(group, zone(left)) x (group, zone(left))]

Returns:

Matrix [(group, zone(left)) x (group, zone(left))]

getEmigrationMatrix

protected org.nuiton.math.matrix.MatrixND getEmigrationMatrix(org.nuiton.math.matrix.MatrixND aN)

getImmigrationMatrix

public org.nuiton.math.matrix.MatrixND getImmigrationMatrix(Month month,
                                                   org.nuiton.math.matrix.MatrixND N)

Description copied from interface: PopulationSeasonInfo

Matrix [(group, zone(reached)) x (group, zone(reached))]

Parameters:

month -

Matrix [(group, zone(reached)) x (group, zone(reached))]

N -

Matrix [(group, zone(reached)) x (group, zone(reached))]

Returns:

Matrix [(group, zone(reached)) x (group, zone(reached))]

getImmigrationMatrix

protected org.nuiton.math.matrix.MatrixND getImmigrationMatrix(org.nuiton.math.matrix.MatrixND aN)

setMigrationEquationContent

public void setMigrationEquationContent(String content)

setEmigrationEquationContent

public void setEmigrationEquationContent(String content)

setImmigrationEquationContent

public void setImmigrationEquationContent(String content)

getReproductionMatrix

public org.nuiton.math.matrix.MatrixND getReproductionMatrix(Month month,
                                                    org.nuiton.math.matrix.MatrixND aN)

Construit la matrice de reproduction. C'est un vecteur contenant le nombre d'individu creer par la reproduction. Le vecteur est structure en zone de reproduction.

Parameters:

month -

Matrix [zone(repro)]

aN -

Matrix [zone(repro)]

Returns:

Matrix [zone(repro)]

toString

public String toString()

Overrides:

toString in class PopulationSeasonInfoAbstract