fr.ifremer.isisfish.simulator.sensitivity
Class AbstractSensitivityAnalysis

java.lang.Object
  fr.ifremer.isisfish.simulator.sensitivity.AbstractSensitivityAnalysis

All Implemented Interfaces:

SensitivityAnalysis

public abstract class AbstractSensitivityAnalysis
extends Object
implements SensitivityAnalysis

Constructor Summary

AbstractSensitivityAnalysis()

Method Summary

protected String	createImportInstruction(SensitivityExport export, List<SimulationStorage> simulationStorages)
protected String	editRInstruction(String rCall)
protected void	renameObjects(org.nuiton.j2r.REngine engine, String simulationName)
void	setIsisFactorsR(DesignPlan plan, File outputdirectory) Method to create the isis.factors dataframe in R.
protected void	testNoDiscrete(List<Factor> factors)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fr.ifremer.isisfish.simulator.sensitivity.SensitivityAnalysis

analyzeResult, canManageCardinality, compute, getDescription

Constructor Detail

AbstractSensitivityAnalysis

public AbstractSensitivityAnalysis()

Method Detail

setIsisFactorsR

public void setIsisFactorsR(DesignPlan plan,
                            File outputdirectory)
                     throws SensitivityException

Method to create the isis.factors dataframe in R.

Parameters:

plan - Design plan of the sensitivity analysis

outputdirectory - the directory on which we will calculate the destination RData file. The RData file will be named directory.RData and saved in the directory parent.

Throws:

SensitivityException - if an error occur while talking to R

editRInstruction

protected String editRInstruction(String rCall)

testNoDiscrete

protected void testNoDiscrete(List<Factor> factors)
                       throws SensitivityException

Throws:

SensitivityException

createImportInstruction

protected String createImportInstruction(SensitivityExport export,
                                         List<SimulationStorage> simulationStorages)

renameObjects

protected void renameObjects(org.nuiton.j2r.REngine engine,
                             String simulationName)
                      throws org.nuiton.j2r.RException

Throws:

org.nuiton.j2r.RException