fr.ifremer.isisfish.simulator.sensitivity
Class AbstractSensitivityCalculator

java.lang.Object
  fr.ifremer.isisfish.simulator.sensitivity.AbstractSensitivityCalculator

All Implemented Interfaces:

SensitivityCalculator

public abstract class AbstractSensitivityCalculator
extends Object
implements SensitivityCalculator

Field Summary

protected org.nuiton.topia.TopiaContext

context Topia context used for discrete domain nominal value compute.

Constructor Summary

AbstractSensitivityCalculator()

Method Summary

protected String	createImportInstruction(SensitivityExport export, List<SimulationStorage> simulationStorages)
protected String	editRInstruction(String rCall)
protected String	getNominalValue(Factor factor)
protected void	renameObjects(org.nuiton.j2r.REngine engine, String simulationName)
void	setIsisFactorsR(DesignPlan plan, File outputdirectory) Method to create the isis.factors dataframe in R.
void	setTopiaContext(org.nuiton.topia.TopiaContext context) Set topia context on current region to nominal value compute.
protected void	testNoDiscrete(List<Factor<?,?>> factors)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface fr.ifremer.isisfish.simulator.sensitivity.SensitivityCalculator

analyzeResult, canManageCardinality, compute, getDescription

Field Detail

context

protected org.nuiton.topia.TopiaContext context

Topia context used for discrete domain nominal value compute.

Constructor Detail

AbstractSensitivityCalculator

public AbstractSensitivityCalculator()

Method Detail

setTopiaContext

public void setTopiaContext(org.nuiton.topia.TopiaContext context)

Set topia context on current region to nominal value compute.

Specified by:

setTopiaContext in interface SensitivityCalculator

Parameters:

context - context

setIsisFactorsR

public void setIsisFactorsR(DesignPlan plan,
                            File outputdirectory)
                     throws SensitivityException

Method to create the isis.factors dataframe in R.

Parameters:

plan - Design plan of the sensitivity analysis

outputdirectory - the directory on which we will calculate the destination RData file. The RData file will be named directory.RData and saved in the directory parent.

Throws:

SensitivityException

getNominalValue

protected String getNominalValue(Factor factor)

editRInstruction

protected String editRInstruction(String rCall)

testNoDiscrete

protected void testNoDiscrete(List<Factor<?,?>> factors)
                       throws SensitivityException

Throws:

SensitivityException

createImportInstruction

protected String createImportInstruction(SensitivityExport export,
                                         List<SimulationStorage> simulationStorages)

renameObjects

protected void renameObjects(org.nuiton.j2r.REngine engine,
                             String simulationName)
                      throws org.nuiton.j2r.RException

Throws:

org.nuiton.j2r.RException