org.nuiton.j2r

Interface REngine

All Known Implementing Classes:

REngineAbstract, RJniEngine, RNetEngine, RProxy

public interface REngine

This interface is the common part between the different technologies used to access R.

Method Summary

Modifier and Type	Method and Description
void	clearSession() Remove all the objects present in the actual R session.
void	commit() Commit all the R instructions that have been stored and not commited yet.
void	cp(String source, String destination) Copy an object.
void	dget(String rObject, File inputFile) Use the dget rInstruction to store the content of a file (created with the dput instruction) into a R object.
void	dget(String rObject, String inputFileName) Use the dget rInstruction to store the content of a file (created with the dput instruction) into a R object.
void	dput(String rObject, File outputFile) Use the dput R instruction to store the content of a R object to a file.
void	dput(String rObject, String outputFileName) Use the dput R instruction to store the content of a R object to a file.
Object	eval(String expr) Evaluate the expression given in parameter in R.
Object	evalScript(String expr) Evaluate the multi-line expression given in parameter in R.
File	getwd() Get the actual R session working directory
boolean	init() Initialize the engine.
Boolean	isAutoCommit() Return the autocommit status
void	loadRData(File directory) Load .RData file located in directory
void	loadRData(File directory, String fileName) Load a specific R session : Load the "fileName.RData" file located in directory.
void	loadRData(String filename) Load filename.RData file located in current working directory
String[]	ls() List all R object present in the actual session
void	mv(String source, String destination) Make a copy of an object and remove the old one.
void	plot(String filename, String x, String y, String type, String main, String sub, String xlab, String ylab, String asp)
void	remove(String rObject) Remove a R object from the actual session
void	saveRData(File directory) Save the session in a .RData file in directory
void	saveRData(File directory, String fileName) Save a R session in a fileName.RData file located in directory.
void	saveRData(String filename) Save a R session in a filename.RData file located in the current working directory
void	setAutoCommit(Boolean autocommit) Set the autocommit property.
void	setwd(File directory) Set the R working directory
void	terminate() End the engine use.
void	voidEval(String expr) Evaluate the expression given in parameter in R without result returned.

Method Detail

init

boolean init()

Initialize the engine. The parameters are given with the JVM options : -D...

Returns:

true/false to indicate if the initialization was successful.

eval

Object eval(String expr)
     throws RException

Evaluate the expression given in parameter in R.

Parameters:

expr - the expression to evaluate.

Returns:

the value return by the expression.

Throws:

RException - if an error occur while trying to evaluate the expression.

voidEval

void voidEval(String expr)
       throws RException

Evaluate the expression given in parameter in R without result returned. When it is possible, it allows to save time (transfer and conversion from R to Java).

Parameters:

expr - the expression to evaluate

Throws:

RException - if an error occured while trying to evaluate the expression.

evalScript

Object evalScript(String expr)
           throws RException

Evaluate the multi-line expression given in parameter in R.

Parameters:

expr - the multi-line expression to evaluate.

Returns:

the value returned by the expression.

Throws:

RException - if an error occur while trying to evaluate the expression.

terminate

void terminate()
        throws RException

End the engine use.

Throws:

RException

loadRData

void loadRData(File directory)
        throws RException

Load .RData file located in directory

Parameters:

directory - directory where the .RData file is located

Throws:

RException

loadRData

void loadRData(String filename)
        throws RException

Load filename.RData file located in current working directory

Parameters:

filename - name of the .RData file (will be followed by .RData)

Throws:

RException

saveRData

void saveRData(File directory)
        throws RException

Save the session in a .RData file in directory

Parameters:

directory - where the .RData file will be saved

Throws:

RException

setwd

void setwd(File directory)
    throws RException

Set the R working directory

Parameters:

directory - to set

Throws:

RException

getwd

File getwd()
    throws RException

Get the actual R session working directory

Returns:

a File that is the actual R session working directory

Throws:

RException

dput

void dput(String rObject,
          String outputFileName)
   throws RException

Use the dput R instruction to store the content of a R object to a file. The file created will be in the working directory

Parameters:

rObject - name of the R object to save

outputFileName - name of the file to save

Throws:

RException

dget

void dget(String rObject,
          String inputFileName)
   throws RException

Use the dget rInstruction to store the content of a file (created with the dput instruction) into a R object. The file used have to be in the working directory

Parameters:

rObject - name of the R object created

inputFileName - name of the file to load

Throws:

RException

dput

void dput(String rObject,
          File outputFile)
   throws RException

Use the dput R instruction to store the content of a R object to a file.

Parameters:

rObject - R object to save

outputFile - the file to save

Throws:

RException

dget

void dget(String rObject,
          File inputFile)
   throws RException

Use the dget rInstruction to store the content of a file (created with the dput instruction) into a R object.

Parameters:

rObject - name of the R object created

inputFile - file to load

Throws:

RException

remove

void remove(String rObject)
     throws RException

Remove a R object from the actual session

Parameters:

rObject - to be removed from the session

Throws:

RException

mv

void mv(String source,
        String destination)
 throws RException

Make a copy of an object and remove the old one.

Parameters:

source - the object to be copied and deleted

destination - the object to be created

Throws:

RException

cp

void cp(String source,
        String destination)
 throws RException

Copy an object.

Parameters:

source - the object to be copied

destination - the object to be created

Throws:

RException

ls

String[] ls()
     throws RException

List all R object present in the actual session

Returns:

a list containing the name of all the R objects in the R session.

Throws:

RException

clearSession

void clearSession()
           throws RException

Remove all the objects present in the actual R session.

Throws:

RException

setAutoCommit

void setAutoCommit(Boolean autocommit)
            throws RException

Set the autocommit property. When switching from autocommit = false to true, the commit operation is performed.

Parameters:

autocommit - If true, R instructions are sent when they are thrown. If false, the instructions are stored in a LinkedList and the user needs to explicit the commit() instruction.

Throws:

RException - if an error occured during the commit operation.

isAutoCommit

Boolean isAutoCommit()

Return the autocommit status

Returns:

true if engine in auto-commit mode

commit

void commit()
     throws RException

Commit all the R instructions that have been stored and not commited yet.

Throws:

RException

loadRData

void loadRData(File directory,
               String fileName)
        throws RException

Load a specific R session : Load the "fileName.RData" file located in directory.

Parameters:

directory - directory where the ".RData" file is located

fileName - name of the file to load (will load the fileName.RData file)

Throws:

RException - if an error occur while loading the R session file.

saveRData

void saveRData(File directory,
               String fileName)
        throws RException

Save a R session in a fileName.RData file located in directory.

Parameters:

directory - where the ".RData" file will be located

fileName - name of the file to save (will save in the fileName.RData file)

Throws:

RException - if an error occur while saving the R session.

saveRData

void saveRData(String filename)
        throws RException

Save a R session in a filename.RData file located in the current working directory

Parameters:

filename -

Throws:

RException

plot

void plot(String filename,
          String x,
          String y,
          String type,
          String main,
          String sub,
          String xlab,
          String ylab,
          String asp)
   throws RException

Throws:

RException