Uses of Class
org.obolibrary.oboformat.parser.OBOFormatParserException

Packages that use OBOFormatParserException

Package	Description
org.obolibrary.obo2owl
org.obolibrary.oboformat.parser
org.obolibrary.oboformat.writer

Uses of OBOFormatParserException in org.obolibrary.obo2owl

Methods in org.obolibrary.obo2owl that throw OBOFormatParserException

Modifier and Type	Method and Description
static void	OWLAPIObo2Owl.convertURL(String iri, String outFile, org.semanticweb.owlapi.model.OWLOntologyManager manager) Static convenience method which: (1) creates an Obo2Owl bridge object (2) parses an obo file from a URL (3) converts that to an OWL ontology (4) saves the OWL ontology as RDF/XML
static void	OWLAPIObo2Owl.convertURL(String iri, String outFile, String defaultOnt, org.semanticweb.owlapi.model.OWLOntologyManager manager) See OWLAPIObo2Owl.convertURL(String iri, String outFile, OWLOntologyManager manager)

Uses of OBOFormatParserException in org.obolibrary.oboformat.parser

Methods in org.obolibrary.oboformat.parser that throw OBOFormatParserException

Modifier and Type	Method and Description
protected void	OBOFormatParser.forceParseNlOrEof()
OBODoc	OBOFormatParser.parse(BufferedReader reader)
OBODoc	OBOFormatParser.parse(File file) Parses a local file to an OBODoc.
OBODoc	OBOFormatParser.parse(String fn) Parses a local file or URL to an OBODoc.
OBODoc	OBOFormatParser.parse(URL url) Parses a remote URL to an OBODoc.
void	OBOFormatParser.parseEntityFrame(OBODoc obodoc)
void	OBOFormatParser.parseEOL(Clause cl)
protected void	OBOFormatParser.parseHeaderClause(Frame h)
protected boolean	OBOFormatParser.parseHeaderClauseNl(Frame h) header-clause ::= format-version-TVP | ...
void	OBOFormatParser.parseHeaderFrame(Frame h)
protected void	OBOFormatParser.parseIdLine(Frame f)
void	OBOFormatParser.parseOBODoc(OBODoc obodoc)
protected void	OBOFormatParser.parseOneOrMoreWs()
void	OBOFormatParser.parseTermFrame(OBODoc obodoc) term-frame ::= nl* '[Term]' nl id-Tag Class-ID EOL { term-frame-clause EOL }.
Clause	OBOFormatParser.parseTermFrameClause()
protected void	OBOFormatParser.parseTermFrameClauseEOL(Frame f)
void	OBOFormatParser.parseTypedefFrame(OBODoc obodoc) Typedef-frame ::= nl* '[Typedef]' nl id-Tag Class-ID EOL { Typedef-frame-clause EOL }.
Clause	OBOFormatParser.parseTypedefFrameClause()
protected void	OBOFormatParser.parseTypedefFrameClauseEOL(Frame f)
protected void	OBOFormatParser.parseUnquotedString(Clause cl)
OBODoc	OBOFormatParser.parseURL(String urlstr) Parses a remote URL to an OBODoc.
protected void	OBOFormatParser.parseWs()
protected void	OBOFormatParser.parseZeroOrMoreWsOptCmtNl()

Uses of OBOFormatParserException in org.obolibrary.oboformat.writer

Methods in org.obolibrary.oboformat.writer that throw OBOFormatParserException

Modifier and Type	Method and Description
void	OBOFormatWriter.write(BufferedReader reader, BufferedWriter writer)
void	OBOFormatWriter.write(String fn, BufferedWriter writer) Write.
void	OBOFormatWriter.write(URL url, BufferedWriter writer) Write.